Nope. I've got the ones to make credstiks, digipicks, data slates, and perk magazines more visible, dark mode terminal, crafting stations dark mode easier to read, a slightly more transparent glass, StarUI, and one to tone down the green filter, as well as the ASI loader version of a plugin to keep achievements always enabled. Can't think of why any of those would impact what people choose to equip (or if he does have it equipped make it invisible, I didn't do the force companion inventory console command if that still exists in this game like it did in previous Bethesda games to check)

==EDIT== Oh, and one that swaps the flashlight AoE to a more uniformly bright one rather than the weird kind of eye shaped one that's default, but that also shouldn't impact anything I'd think.